Index

A

apply_zoom() (DiatomTrack.gui.editor.TrackEditor method)

associate() (in module DiatomTrack.core.assignment) associate_secondary() (in module DiatomTrack.core.assignment)

B

build_tree() (DiatomTrack.gui.editor.TrackEditor method)

C

calculate_iou() (in module DiatomTrack.core.assignment) canvas_double_right() (DiatomTrack.gui.editor.TrackEditor method) close_window() (DiatomTrack.gui.editor.TrackEditor method) (DiatomTrack.gui.load.ReadSegmentationWindow method) (DiatomTrack.gui.load.ReadTrackVideoWindow method) (DiatomTrack.gui.load.ReadTrackWindow method) (DiatomTrack.gui.parser.ParserDirectory method) (DiatomTrack.gui.parser.ParserEditor method) (DiatomTrack.gui.parser.ParserSkip method) (DiatomTrack.gui.parser.ParserTrack method) (DiatomTrack.gui.save.SaveData method)

contour_filter() (in module DiatomTrack.utils.contours) contour_filter_process() (in module DiatomTrack.utils.contours) contours_to_properties() (in module DiatomTrack.utils.contours) contours_to_rectangles() (in module DiatomTrack.utils.contours) convert_array_to_rectangle() (in module DiatomTrack.utils.contours) convert_contour_to_array() (in module DiatomTrack.utils.contours) count (DiatomTrack.core.tracker.KalmanTracker attribute) cv_imread() (in module DiatomTrack.utils.DataUtils) cvtColor() (in module DiatomTrack.utils.DataUtils)

D

DiatomTrack module DiatomTrack (class in DiatomTrack.core.tracker) DiatomTrack.core module DiatomTrack.core.assignment module DiatomTrack.core.segmentation module DiatomTrack.core.tracker module DiatomTrack.gui module DiatomTrack.gui.editor module DiatomTrack.gui.load module DiatomTrack.gui.parser module

DiatomTrack.gui.save module DiatomTrack.main module DiatomTrack.model module DiatomTrack.model.model module DiatomTrack.utils module DiatomTrack.utils.contours module DiatomTrack.utils.DataUtils module DiatomTrack.utils.Transforms module down_arrow_press() (DiatomTrack.gui.editor.TrackEditor method) draw_overlay() (DiatomTrack.gui.editor.TrackEditor method) draw_rectangle() (DiatomTrack.gui.editor.TrackEditor method)

E

end_rectangle() (DiatomTrack.gui.editor.TrackEditor method) euclid_batch() (in module DiatomTrack.core.assignment)

expand_tree() (DiatomTrack.gui.editor.TrackEditor method) expand_tree_children() (DiatomTrack.gui.editor.TrackEditor method)

F

faster_video() (DiatomTrack.gui.editor.TrackEditor method) find_age_line_points() (DiatomTrack.gui.editor.TrackEditor method) find_trace_line_points() (DiatomTrack.gui.editor.TrackEditor method) finish() (DiatomTrack.gui.editor.TrackEditor method)

flip_cell() (DiatomTrack.gui.editor.TrackEditor method) flip_frustule() (DiatomTrack.gui.editor.TrackEditor method) flip_selected_cell() (DiatomTrack.gui.editor.TrackEditor method) forward() (DiatomTrack.model.model.UNet method)

G

get_color() (DiatomTrack.gui.editor.TrackEditor method) get_predictions() (DiatomTrack.core.tracker.KalmanTracker method)

get_state() (DiatomTrack.core.tracker.DiatomTrack method) (DiatomTrack.core.tracker.KalmanTracker method)

H

highlight_track() (DiatomTrack.gui.editor.TrackEditor method)

I

InitializeDataPredict (class in DiatomTrack.utils.DataUtils) invoke_confirm() (DiatomTrack.gui.parser.ParserDirectory method) (DiatomTrack.gui.parser.ParserEditor method) (DiatomTrack.gui.parser.ParserSkip method) (DiatomTrack.gui.parser.ParserTrack method)

iou_batch() (in module DiatomTrack.core.assignment)

J

jump_to_frame() (DiatomTrack.gui.editor.TrackEditor method)

jump_to_time() (DiatomTrack.gui.editor.TrackEditor method)

K

KalmanTracker (class in DiatomTrack.core.tracker)

L

left_arrow_press() (DiatomTrack.gui.editor.TrackEditor method) linear_assignment() (in module DiatomTrack.core.assignment)

listbox_double_click() (DiatomTrack.gui.editor.TrackEditor method) listbox_right_click() (DiatomTrack.gui.editor.TrackEditor method)

M

main() (in module DiatomTrack.main) manual_update_canvas() (DiatomTrack.gui.editor.TrackEditor method) merge() (DiatomTrack.gui.editor.TrackEditor method) module DiatomTrack DiatomTrack.core DiatomTrack.core.assignment DiatomTrack.core.segmentation DiatomTrack.core.tracker DiatomTrack.gui DiatomTrack.gui.editor DiatomTrack.gui.load DiatomTrack.gui.parser DiatomTrack.gui.save DiatomTrack.main DiatomTrack.model DiatomTrack.model.model DiatomTrack.utils DiatomTrack.utils.contours DiatomTrack.utils.DataUtils DiatomTrack.utils.Transforms

N

Normalize (class in DiatomTrack.utils.Transforms)

P

parse() (DiatomTrack.gui.parser.ParserDirectory method) (DiatomTrack.gui.parser.ParserEditor method) (DiatomTrack.gui.parser.ParserSkip method) (DiatomTrack.gui.parser.ParserTrack method) (DiatomTrack.gui.save.SaveData method) parse_editor() (in module DiatomTrack.gui.parser) parse_segmentation() (in module DiatomTrack.gui.parser)

parse_tracker() (in module DiatomTrack.gui.parser) ParserDirectory (class in DiatomTrack.gui.parser) ParserEditor (class in DiatomTrack.gui.parser) ParserSkip (class in DiatomTrack.gui.parser) ParserTrack (class in DiatomTrack.gui.parser) play_video() (DiatomTrack.gui.editor.TrackEditor method) predict() (DiatomTrack.core.tracker.KalmanTracker method)

R

read_file() (DiatomTrack.gui.load.ReadSegmentationWindow method) (DiatomTrack.gui.load.ReadTrackVideoWindow method) (DiatomTrack.gui.load.ReadTrackWindow method) read_seg() (in module DiatomTrack.gui.load) read_track() (in module DiatomTrack.gui.load) read_tvf() (in module DiatomTrack.gui.load) ReadSegmentationWindow (class in DiatomTrack.gui.load) ReadTrackVideoWindow (class in DiatomTrack.gui.load) ReadTrackWindow (class in DiatomTrack.gui.load) remove() (DiatomTrack.gui.editor.TrackEditor method) remove_restore_short() (DiatomTrack.gui.editor.TrackEditor method)

reset_inputs() (DiatomTrack.gui.parser.ParserDirectory method) (DiatomTrack.gui.parser.ParserEditor method) (DiatomTrack.gui.parser.ParserSkip method) (DiatomTrack.gui.parser.ParserTrack method) reset_zoom() (DiatomTrack.gui.editor.TrackEditor method) resize() (in module DiatomTrack.utils.DataUtils) restart_video() (DiatomTrack.gui.editor.TrackEditor method) restore() (DiatomTrack.gui.editor.TrackEditor method) right_arrow_press() (DiatomTrack.gui.editor.TrackEditor method) rotation_boundary() (in module DiatomTrack.utils.contours) run_segmentation() (in module DiatomTrack.core.segmentation)

S

save() (DiatomTrack.gui.save.SaveData method) save_df() (DiatomTrack.gui.save.SaveData method) save_metadata_video() (DiatomTrack.gui.save.SaveData method) save_odf() (DiatomTrack.gui.save.SaveData method) save_statistics() (DiatomTrack.gui.save.SaveData method) save_tvf() (DiatomTrack.gui.save.SaveData method) SaveData (class in DiatomTrack.gui.save) scrub() (DiatomTrack.gui.editor.TrackEditor method) SegDatasetPredict (class in DiatomTrack.utils.DataUtils) segmentation() (in module DiatomTrack.core.segmentation) segmentation_setup() (in module DiatomTrack.core.segmentation) select_saving() (DiatomTrack.gui.parser.ParserDirectory method) (DiatomTrack.gui.parser.ParserEditor method) (DiatomTrack.gui.parser.ParserSkip method) (DiatomTrack.gui.save.SaveData method) select_segmentation() (DiatomTrack.gui.parser.ParserSkip method)

select_source() (DiatomTrack.gui.parser.ParserDirectory method) select_states() (DiatomTrack.gui.parser.ParserDirectory method) (DiatomTrack.gui.parser.ParserSkip method) select_track() (DiatomTrack.gui.parser.ParserEditor method) select_track_video() (DiatomTrack.gui.parser.ParserEditor method) select_video() (DiatomTrack.gui.parser.ParserEditor method) (DiatomTrack.gui.parser.ParserSkip method) shift_overlay() (DiatomTrack.gui.editor.TrackEditor method) skip_window() (DiatomTrack.gui.parser.ParserDirectory method) (DiatomTrack.gui.parser.ParserSkip method) slower_video() (DiatomTrack.gui.editor.TrackEditor method) spacebar_press() (DiatomTrack.gui.editor.TrackEditor method) split() (DiatomTrack.gui.editor.TrackEditor method) start_rectangle() (DiatomTrack.gui.editor.TrackEditor method) summarize() (DiatomTrack.core.tracker.DiatomTrack method) (DiatomTrack.core.tracker.KalmanTracker method) swap_tracklets() (DiatomTrack.gui.editor.TrackEditor method)

T

toggle_cell_age() (DiatomTrack.gui.editor.TrackEditor method) toggle_frustule_age() (DiatomTrack.gui.editor.TrackEditor method) toggle_id() (DiatomTrack.gui.editor.TrackEditor method) toggle_merge() (DiatomTrack.gui.editor.TrackEditor method) toggle_move() (DiatomTrack.gui.editor.TrackEditor method) toggle_overlay() (DiatomTrack.gui.editor.TrackEditor method) toggle_trace() (DiatomTrack.gui.editor.TrackEditor method) toggle_tree() (DiatomTrack.gui.editor.TrackEditor method) ToTensor (class in DiatomTrack.utils.Transforms)

track() (in module DiatomTrack.core.tracker) TrackEditor (class in DiatomTrack.gui.editor) tracks_to_dataframe() (in module DiatomTrack.core.tracker) tree (DiatomTrack.core.tracker.KalmanTracker attribute) tree_current() (DiatomTrack.gui.editor.TrackEditor method) tree_double_click() (DiatomTrack.gui.editor.TrackEditor method) tree_double_right() (DiatomTrack.gui.editor.TrackEditor method) tree_select() (DiatomTrack.gui.editor.TrackEditor method) tree_set_limit() (DiatomTrack.gui.editor.TrackEditor method) tree_zoom() (DiatomTrack.gui.editor.TrackEditor method)

U

ui_init() (DiatomTrack.gui.editor.TrackEditor method) UNet (class in DiatomTrack.model.model) up_arrow_press() (DiatomTrack.gui.editor.TrackEditor method) update() (DiatomTrack.core.tracker.DiatomTrack method) (DiatomTrack.core.tracker.KalmanTracker method)

update_canvas() (DiatomTrack.gui.editor.TrackEditor method) update_frame_number() (DiatomTrack.gui.editor.TrackEditor method) update_speed_display() (DiatomTrack.gui.editor.TrackEditor method) update_time() (DiatomTrack.gui.editor.TrackEditor method)

W

window_exception() (DiatomTrack.gui.editor.TrackEditor method) (DiatomTrack.gui.load.ReadSegmentationWindow method) (DiatomTrack.gui.load.ReadTrackVideoWindow method) (DiatomTrack.gui.load.ReadTrackWindow method) (DiatomTrack.gui.parser.ParserDirectory method) (DiatomTrack.gui.parser.ParserEditor method) (DiatomTrack.gui.parser.ParserSkip method) (DiatomTrack.gui.parser.ParserTrack method) (DiatomTrack.gui.save.SaveData method)